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Debugging beyond the debugger

2019-05-08T00:00:00Z

Real-life debugging tools

Most programming — and sysadmin — problems can be debugged in a fairly straight forward manner using logs, print statements, educated guesses, or an actual debugger. Sometimes, though, the problem is more elusive. There’s a wider box of tricks that can be employed in these cases but I’ve not managed to find a nice overview of them, so here’s mine. I’m mainly focusing on Linux and similar systems, but there tend to be alternatives available for other Operating Systems or VMs if you seek them out.

Networking

tcpdump

tcpdump prints out descriptions of packets on a network interface. You can apply filters to limit which packets are displayed, chose to dump the entire content of the packet, and so forth.

Typical usage might look something like:

# tcpdump -nSi eth0 port 80
tcpdump: verbose output suppressed, use -v or -vv for full protocol decode
listening on eth0, link-type EN10MB (Ethernet), capture size 262144 bytes
16:03:35.577781 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [S], seq 2815779044, win 64800, options [mss 1440,sackOK,TS val 2378811665 ecr 0,nop,wscale 7], length 0
16:03:35.586853 IP6 2001:db8::2.80 > 2001:db8::1.54742: Flags [S.], seq 1522609102, ack 2815779045, win 28560, options [mss 1440,sackOK,TS val 3063610173 ecr 2378811665,nop,wscale 7], length 0
16:03:35.586877 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [.], ack 1522609103, win 507, options [nop,nop,TS val 2378811674 ecr 3063610173], length 0
16:03:35.620678 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [P.], seq 2815779045:2815779399, ack 1522609103, win 507, options [nop,nop,TS val 2378811708 ecr 3063610173], length 354: HTTP: GET / HTTP/1.1

Here you can see the start of a plaintext HTTP request: the three-way handshake as the TCP connection is established followed by a GET request. Even if the data is encrypted as it will be in most cases, it’s often useful to see the “shape” of the transmissions: did the client start sending data when it connected, did the server ever respond, etc.

Daniel Miessler has a good tutorial on tcpdump if you’re not familiar with it and don’t want to jump straight into the man page.

… with Docker

Docker sets up separate network namespaces for each container. To see the traffic across the interfaces of a single container you can nsenter the container’s network namespace:

# nsenter -t $(docker inspect --format '{{.State.Pid}}' my_container) -n tcpdump -nS port 80

This retrieves the PID for the container, and tells nsenter to enter the network (-n) namespace from the given target (-t) PID, and then run the given command (in this case tcpdump ...).

openssl s_client / s_server

When a connection is using TLS it’s often useful to try connecting to the server and see what certificate it presents, algorithms it negotiates, and so forth. OpenSSL offers two useful subcommands which can help with this: s_client for connecting as a client, and s_server for listening to connections.

For example, using s_client to connect to google.com on the standard HTTPS port shows us details about the server cert and its verification status:

$ openssl s_client -connect google.com:443
CONNECTED(00000003)
depth=2 OU = GlobalSign Root CA - R2, O = GlobalSign, CN = GlobalSign
verify return:1
depth=1 C = US, O = Google Trust Services, CN = Google Internet Authority G3
verify return:1
depth=0 C = US, ST = California, L = Mountain View, O = Google LLC, CN = *.google.com
verify return:1
---
Certificate chain
 0 s:C = US, ST = California, L = Mountain View, O = Google LLC, CN = *.google.com
   i:C = US, O = Google Trust Services, CN = Google Internet Authority G3
 1 s:C = US, O = Google Trust Services, CN = Google Internet Authority G3
   i:OU = GlobalSign Root CA - R2, O = GlobalSign, CN = GlobalSign
---
# ...

Whereas connecting to my webserver and providing an unknown host in the SNI field results in an SSL alert 112 (“The server name sent was not recognized”) and no server certificate is sent:

$ openssl s_client -connect chameth.com:443 -servername example.com
CONNECTED(00000003)
140384831313024:error:14094458:SSL routines:ssl3_read_bytes:tlsv1 unrecognized name:../ssl/record/rec_layer_s3.c:1536:SSL alert number 112
---
no peer certificate available
---
# ...

Often if you hit this kind of alert in an application the exact error will be lost somewhere in the many layers between the SSL library and the logs, so being able to directly connect and test can help diagnose a lot of issues.

Once a connection is established you can read and write plain text and it will be encrypted and decrypted automatically.

Java apps

If a Java app is involved in the connection, you can enable a lot of built-in debugging with a simple JVM property: javax.net.debug. You can tweak what exactly gets logged, but the easiest thing to do is just set the property to all and you’ll see information about certificate chains, verification, and packet dumps:

$ java -Djavax.net.debug=all -jar ....
# ...
found key for : duke
chain [0] = [
[
  Version: V1
  Subject: CN=Duke, OU=Java Software, O="Sun Microsystems, Inc.",
  L=Cupertino, ST=CA, C=US
# ...

More information about Java’s debugging options is available on docs.oracle.com.

Thread and core dumps

Higher-level languages frequently provide an interactive way to dump the current execution state of all of their threads (a “thread dump”). This is useful to spot deadlocks, some types of race conditions, and as a quick and dirty method of investigating hangs or excessive CPU usage.

With both Java and Go applications you can send a QUIT signal to have a thread dump printed out; Go applications will quit after doing so, Java ones will carry on running. At most terminals you can hit Ctrl and \ to send a QUIT signal.

For Java you can also use the jstack tool from the JDK to dump threads by PID; this can be useful if the application is running in the background or has redirected sysout:

$ jstack 8321
Attaching to process ID 8321, please wait...
Debugger attached successfully.
Client compiler detected.

Thread t@5: (state = BLOCKED)
 - java.lang.Object.wait(long) @bci=-1107318896 (Interpreted frame)
 - java.lang.Object.wait(long) @bci=0 (Interpreted frame)
 - java.lang.ref.ReferenceQueue.remove(long) @bci=44, line=116 (Interpreted frame)
 - java.lang.ref.ReferenceQueue.remove() @bci=2, line=132 (Interpreted frame)
 - java.lang.ref.Finalizer$FinalizerThread.run() @bci=3, line=159 (Interpreted frame)

# ...

A core dump provides more complete information about the state of a process, but is often more complex to interpret. The gcore utility from GDB will create a core dump of a process with a given PID. You can then generally load the core file using your normal debugger, depending on the language in question.

System calls

strace is the swiss army knife for seeing what a process is doing. It details each system call made by a program (you can filter them down, of course). For example:

$ strace -e read curl https://google.com/
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0 \236\0\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P!\0\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\200l\2\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20Q\0\0\0\0\0\0"..., 832) = 832
# ...
read(3, "\0\0\0\0\0\0\0\4\25\345\366\302\273sE6\365wI\225\321|\3435Z\362\216\372\215\251aO"..., 253) = 253
<HTML><HEAD><meta http-equiv="content-type" content="text/html;charset=utf-8">
<TITLE>301 Moved</TITLE></HEAD><BODY>
<H1>301 Moved</H1>
The document has moved
<A HREF="https://www.google.com/">here</A>.
</BODY></HTML>
read(3, "\27\3\3\0!", 5)                = 5
# ...

Brendan Gregg has a nice guide on strace and alternatives.

… with docker

When the application is running in docker you can usually just strace it from the host with the correct PID (from e.g. docker inspect --format '{{.State.Pid}}' my_container). Sometimes you may need to trace the startup of an application though, which is a bit trickier. Instead you can run a new container using the same PID namespace as your target, and the permissions needed to strace:

$ docker run --rm -it --pid=container:my_container \
  --net=container:my_container \
  --cap-add sys_admin \
  --cap-add sys_ptrace \
  alpine

From within the new container you can install strace, and trace any running program within the target container using strace -p as normal. To start a new program you need access to the target container’s filesystem, which you can get to via /proc/1/root (PID 1 being the main process that docker started in the target container).

Files

Sometimes the problem might relate to file access. There are a couple of straight forward — but nonetheless useful — tools which might help here. inotifywait uses the Linux inotify subsystem to watch files or directories for operations. For example:

$ inotifywait -mr site/content
Setting up watches.  Beware: since -r was given, this may take a while!
Watches established.
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ OPEN 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ CLOSE_WRITE,CLOSE 2019-05-08-debugging-beyond-the-debugger.md
# ...

Here the -m switch makes inotifywait monitor the files forever (instead of exiting on the first modification, which is the normal behaviour) and r makes it recurse into the directory and monitor each file and subdirectory in there.

If you want to see what processes currently have a file open, fuser is the go-to tool. For example:

$ fuser -v /
                     USER PID ACCESS COMMAND
/:                   root     kernel mount /
                     chris      2961 .rc.. systemd
                     chris      2986 .r... gdm-x-session
                     chris      2994 .r... dbus-daemon
                     chris      3001 .r... gnome-session-b
# ...

Honourable mentions

These aren’t really debugging tools, but I feel it’s worth mentioning as they often feature somewhere along the debugging-of-weird-problems journey.

I’ve seen some weird and wonderful problems happen because a disk is full, so a quick df early on in the debugging process never hurts. Some apps may hang, some may corrupt their config, some may fall over and die; sometimes the manner in which they fail doesn’t obviously point to a disk space issue.

Another issue that comes up now and then — especially inside VMs or other environment that don’t have a decent amount of “noise” happening — is entropy exhaustion. A quick look at /proc/sys/kernel/random/entropy_avail should be enough to confirm that everything is ticking along nicely. If it’s exceedingly low then you may find that anything involving random number generation stalls (TLS connections for example).

Android testing with Espresso and Spoon

2017-05-16T00:00:00Z

I’ve been spending some time recently setting up automated testing for our collection of Android apps and libraries at work. We have a mixture of unit tests, integration tests, and UI tests for most projects, and getting them all to run reliably and automatically has posed some interesting challenges.

Running tests on multiple devices using Spoon

Spoon is a tool developed by Square that handles distributing instrumentation tests to multiple connected devices, aggregating the results, and making reports.

As part of our continuous integration we build both application and test APKs, and these are pushed to the build server as build artefacts. A separate build job then pulls these artefacts down to a Mac Mini we have in the office, and executes Spoon with a few arguments:

java -jar spoon-runner.jar \
    --apk application.apk \
    --test-apk applicationTests.apk \
    --fail-on-failure \
    --fail-if-no-device-connected

Spoon finds all devices, deploys both APKs on them, and then begins the instrumentation tests. We use two physical devices and an emulator to cover the form factors and API versions that are important to us; if any test fails on any of those devices, Spoon will return an error code and the build will fail.

For library projects, you only have a single APK containing both the tests and the library itself. The current version of Spoon requires both --apk and --test-apk to be specified, so we simply pass in the same APK to both. It looks like future versions of Spoon will be more flexible in this regard.

Spoon produces HTML reports, showing the status of each test run on each device. We have the report output folder collected as a build artefact, so the reports can be seen right from the build server:

Spoon output summary, showing results of 171 tests run on 3 devices

Flake-free UI testing with Espresso

Espresso is an Android library that provides an API for interacting with and making assertions about the UI of Android applications. Espresso has a very simple interface, and does lots of clever things under the hood to ensure that your tests only execute code when the UI is idle (and hence stable). You shouldn’t ever need to make your code sleep or wait.

In order for Espresso’s magic to work, it needs to know whenever some background activity is going on that it needs to wait for. By default, it hooks in to Android’s AsyncTask executor so it can wait for those to finish. In our apps, there were a few cases where we used an explicit Thread to do some background work, which caused tests to fail intermittently (depending on whether the thread performed its UI update before or after Espresso executed the test code). Rewriting these cases to use an AsyncTask enabled Espresso to figure out what was happening and the tests started passing reliably.

Another, similar, problem occurred where we were using RxJava to load some data. There are two possible ways to deal with this… Espresso has a concept of an idling resource, which provides a way of telling Espresso when a resource is busy so it can belay interacting with or testing the UI until the resource is finished. In our case, the code in question was going to be rewritten soon, so we went for a quicker and dirtier option: force RxJava to use the same executor as AsyncTask.

To do this, we added a simple test utility class that registers an RxJavaPlugin that overrides the Schedulers used by Rx:

/**
 * Hooks in to the RxJava plugins API to force Rx work to be scheduled on the
 * AsyncTask's thread pool executor. This is a quick and dirty hack to make
 * Espresso aware of when Rx is doing work (and wait for it).
 */
public final class RxSchedulerHook {

    private static final RxJavaSchedulersHook javaHook =
            new RxJavaTestSchedulerHook();

    private RxSchedulerHook() {
        // Should not be insantiated
    }

    public static void registerHooksForTesting() {
        if (RxJavaPlugins.getInstance().getSchedulersHook() != javaHook) {
            RxJavaPlugins.getInstance().reset();
            RxJavaPlugins.getInstance().registerSchedulersHook(javaHook);
        }
    }

    private static class RxJavaTestSchedulerHook extends RxJavaSchedulersHook {
        @Override
        public Scheduler getComputationScheduler() {
            return Schedulers.from(AsyncTask.THREAD_POOL_EXECUTOR);
        }

        @Override
        public Scheduler getIOScheduler() {
            return Schedulers.from(AsyncTask.THREAD_POOL_EXECUTOR);
        }

        @Override
        public Scheduler getNewThreadScheduler() {
            return Schedulers.from(AsyncTask.THREAD_POOL_EXECUTOR);
        }
    }
}

With the hook registered Rx does all of its work on the same thread pool as AsyncTask, which Espresso already knows about. It’s not the best long-term solution, but it means we don’t have to spend time integrating IdlingResource for code that doesn’t have long to live. With the hook in place, the tests that were flaking because of Rx started passing reliably as well.

Getting automatic screenshots of failures

Spoon provides a client library to, among other things, take a screenshot of the device. Espresso provides a hook that can be used to change how errors are handled. Putting the two together is very simple:

final FailureHandler defaultHandler =
        new DefaultFailureHandler(
                InstrumentationRegistry.getTargetContext());

Espresso.setFailureHandler(new FailureHandler() {
    @Override
    public void handle(Throwable throwable, Matcher<View> matcher) {
        try {
            Spoon.screenshot(
                    getActivity(),
                    "espresso-failure",
                    description.getClassName(),
                    description.getMethodName());
        } catch (Exception ex) {
            Log.e(TAG, "Error capturing screenshot", ex);
        }
        defaultHandler.handle(throwable, matcher);
    }
});

In our new error handler we simply ask Spoon to take a screenshot, then call Espresso’s original handler so that it can output its debugging information and fail the test. The Spoon runner automatically picks up the screenshot and adds it to the report:

Spoon output details, showing a screenshot captured of the failure

Having the screenshot, error message and logs all presented in a clean UI makes debugging failures much, much easier than searching through a huge build log to try and find the exception.

Filtering tests based on device capabilities

Some tests won’t work on every device you throw at them. We had two problems: some tests require a higher API version than some of our devices, and some of the UIs under test were designed to run only on certain resolutions.

The main cause for our dependence on newer API versions was the use of WireMock, a brilliant library for stubbing out web services. WireMock requires API 19, while our physical devices tend to run versions older than that. Stopping these tests running is simply a case of applying an annotation to the class:

@SdkSuppress(minSdkVersion=19)

Screen resolution is a bit more complicated. One of our apps is designed for a specific tablet device (and will never be used on anything else), and trying to render the UI on smaller screens results in items overlapping, important parts ending up below the fold, and other problems.

We’d still like all the other tests for that app to run on all of the devices, though, so we can test them on a variety of API versions and in other conditions. We just need to suppress the UI tests. To do this, we subclassed the Android ActivityTestRule and overrode the apply method:

@Override
public Statement apply(Statement base, final Description description) {
    if (!canRunUiTests(InstrumentationRegistry.getContext())) {
        // If we can't run UI tests, then return a statement that does nothing
        // at all.  With normal JUnit tests we'd just throw an assumption
        // failure and the test would be ignored, but that makes the Android
        // runner angry.
        return new Statement() {
            @Override
            public void evaluate() throws Throwable {
                // Do nothing
            }
        };
    }

    return super.apply(base, description);
}

/**
 * Checks that the screen size is close enough to that of our tablet device.
 */
@TargetApi(Build.VERSION_CODES.HONEYCOMB_MR2)
private boolean canRunUiTests(Context context) {
    if (Build.VERSION.SDK_INT < Build.VERSION_CODES.HONEYCOMB_MR2) {
        return false;
    }
    int screenWidth = dpToPx(context,
            context.getResources().getConfiguration().screenWidthDp);
    return screenWidth >= 600;
}

private int dpToPx(Context context, int dp) {
    DisplayMetrics displayMetrics = context.getResources().getDisplayMetrics();
    return Math.round(dp * displayMetrics.density);
}

When the rule is run, we check if the screen width meets a minimum number of pixels. If it doesn’t, an empty Statement is returned that turns the test into a no-op. These show up as passed rather than skipped in the output, but there doesn’t seem to be a nice way to signal to the Android JUnit runner that the test is being ignored programatically.