Chameth.com - posts like debugging-beyond-the-debugger, docker-proxying-redux but not docker-automatic-nginx-proxy, migrating-from-github-to-forgejo, sense-api, why-you-should-be-using-https

The Case of the Unchanging Config

2026-04-09T00:00:00Z

Last week I was attempting to make it so I could share pictures on IRC directly from my client. This sounds simple, but it involves a bouncer¹ that proxies the request to a standalone image hosting service that I had to modify to be compatible. At one point my testing loop was:

Make a change to the hosting service
Commit it
Tag a new release
Wait for it to build
Update the version I’m running on my server
Reconfigure the bouncer to pass the new parameter or change the URL or whatever
Try uploading a photo from my phone
Realise I’ve overlooked something and go back to step one

I could have set up a local copy of everything and tested it sensibly. I should have set up a local copy of everything and tested it sensibly. But it seemed like such a trivial change, and setting up the whole environment seemed like such a pain. After the third or so iteration of failure I was pretty annoyed with myself, computers, and basically everything.

My biggest annoyance was that my bouncer would not pick up the new URL from the config when I changed it. It’s meant to reload the config when it receives a SIGHUP, and it claimed to in the logs, but I could clearly see it was still hitting the old URL. Restarting the bouncer to update the config is a pain, as it disconnects me from all the IRC networks, and has to reconnect to them all, reauthenticate, etc. It also mildly spams everyone who shares a channel with me².

When I finally got everything working I had a look at the bouncer source, and thought I’d spotted the issue. I raised a bug report, ending in this remark:

It looks like the config is reloaded properly, but the handler for uploads is created once at startup and has its own copy of the uploader, so effectively snapshots the config to whatever it is at startup:

fileUploadHandler := http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
    cfg := srv.Config()
    h := fileupload.Handler{
        Uploader:    cfg.FileUploader,
        DB:          db,
        Auth:        cfg.Auth,
        HTTPOrigins: cfg.HTTPOrigins,
    }
    h.ServeHTTP(w, r)
})

I’m not quite sure what I thought I saw there, but that’s not right. I want to call it a hallucination, but that feels like a very overloaded word these days. I guess I was just seeing what I wanted to see, and that was a good excuse to stop investigating. Still, even if I misidentified the cause, the bug was still present, right? … Right?

The Science of Deduction

When the developer got back and said he couldn’t reproduce my issue, I went back to my install and immediately reproduced it. With a calmer head, I figured it was probably something with my particular set up. First thing to check: am I actually running the version I think I am?

Unfortunately the bouncer doesn’t actually seem to expose the version anywhere that I can see. It’s not in the logs, it doesn’t have a -version flag, and none of the IRC-based status commands seem to include it. But I know it’s a Go app, and I know Go embeds the version information. go version -m <binary> will dump it all out, but the binary is inside a Docker image, and the Docker image is one of my nice, minimal, artisanal ones so doesn’t ship a go binary. No problem, docker compose cp bouncer:/bnc ./bnc yoinks the binary out of the container, and then dumping the version shows that, yes, I am running the version I thought I was. Hmm.

The next tool I reached for in my toolbox was strace. Maybe it’s not actually reading the file for some reason? I immediately executed strace -p <pid> -e trace=openat,open,read,pread64 -f without having to look any part of that up. Yep. Definitely. Then I edited the config, HUP’d the bouncer, and saw that it was… reading the config file. As it’s meant to. By default strace truncates strings to 32 bytes, so I couldn’t actually see the line I’d changed. Some more definitely-not-RTFMing later, and rerunning it with an extra -s 65536 let me see the full config. Surprise! The config hadn’t changed!

To confirm my findings, I used docker compose cp again, this time yoinking the config file from inside the container. The inside config file was definitely different to the outside config file. What? My hypothesis at this point was “something something Docker nonsense”. I mount the config as read-only, and was wondering if that meant that Docker was doing something weird instead of just bind mounting it. A quick trip to /proc/<pid>/mounts showed that it was, in fact, not doing anything weird, and was just bind mounting it.

If the file is bind mounted, then surely it’s the same file? I ran stat on the file on the host, noted the inode number, then pondered how to actually run stat on the file inside the container, given the aforementioned awkwardly minimal image. The solution was easy: access it via /proc/<pid>/root/. I could’ve saved myself a bunch of docker compose cp if I’d thought about that earlier. Oh well. The inode of that file was different. What?

The answer was DNS. It’s always DNS. Oh, sorry, force of habit. I meant the answer was vim. I was editing the config in vim, and when it saves files, by default, it writes the new content to a temporary file and does an atomic rename. That’s normally a good thing: it prevents corruption if the write fails midway through³. In this case, though, that means the new file has a new inode. Bind mounting a file binds to the inode, so the container just keeps clutching onto the original config from when it was started, blissfully unaware that the party has relocated down the street.

This problem is likely to happen whenever you bind mount a file into a container. When I mentioned this to a friend, he immediately responded “oh yeah, never do that”, and went on to describe the horrible hacks he’s had to add to Ansible to sidestep the issue. The nicer solution is to just bind mount an entire directory if you can, as then it doesn’t matter what happens to the files within it. I really like having the config files sat alongside the Docker compose files, though; having to create a directory just to work around some bind mount weirdness upsets me.

Now I knew what the problem was, I found there was an issue raised against Docker twelve years ago⁴. The first response was “that’s expected”, and I fully agree with the author: “respectfully, that might be expected by you, but it was not expected by me”!⁵ As a result of the issue they added a nice note to the docs:

Note: Many tools used to edit files including vi and sed --in-place may result in an inode change. Since Docker v1.1.0, this will produce an error such as “sed: cannot rename ./sedKdJ9Dy: Device or resource busy”. In the case where you want to edit the mounted file, it is often easiest to instead mount the parent directory.

But in the intervening twelve years, both the note and the functionality described have gone missing. Ho-hum.

I found it interesting how I’ve only just hit this problem, given how long I’ve used Docker. But I realised that almost everything I run I’m happy to just restart. Cattle, not pets, and so on. My IRC bouncer is one of the few exceptions to that. The only other thing I regularly hot reloaded was Centauri, my reverse proxy, but that had a whole config directory mounted because it was shared between containers, so nicely sidestepped the foot-gun.

So lesson learnt: check for weird bind mount issues before raising issues about config hot reloading. It’ll join the esteemed company of “maybe the drive is full and causing completely unrelated problems?”, “perhaps everything is dog slow because the kernel ran out of entropy?”, and “did systemd sneakily take over that functionality while you weren’t looking?” in the troubleshooting checklist.

An IRC bouncer is basically an always-on proxy. It connects to the IRC networks for you, then your clients connect to your bouncer. The bouncer can then send incoming messages to all your different clients, cache them when you’re offline and replay them later, and lots of other nice things people take for granted in their chat apps these days. ↩︎
Join/part/quit spam is part of IRC, and clients have ways of handling it, but I still feel bad about doing it excessively. ↩︎
You can disable this in vim by setting backupcopy=yes. Good luck redoing all the debugging if you ever accidentally remove that from your vimrc, though! ↩︎
Which is weird, because Docker can’t possibly be that old. That would make me much older than I’m prepared to accept. ↩︎
If you read the thread they didn’t actually mean to sound so dismissive, but it’s still pretty funny. “Yes, it’s expected that the foot-gun causes your foot to hurt. Duh. What did you expect?” ↩︎

An interesting Tailscale + Docker gotcha

2026-01-29T00:00:00Z

As I’ve written about before, I use Tailscale for a lot of things. I thought I had it set up in a reasonably secure manner, but I recently noticed a problem.

I use Tailscale’s ACLs to limit what each node can access, based on the tags I apply to it. So an app node can’t access anything via Tailscale, while an integration or server node can access things tagged with either app or integration. This is expressed pretty simply in the Tailscale ACL JSON:

{
	"tagOwners": {
		// Servers that can be SSH'd into
		"tag:server": [],
		// Applications that are exposed on tailscale but never connect out
		"tag:app": [],
		// Things which talk to other services over tailscale (connecting to apps etc)
		"tag:integration": [],
	},
	"grants": [
		{
			// Users can access everything
			"src": ["autogroup:member"],
			"dst": ["*"],
			"ip":  ["*"],
		},
		{
			// Servers and integrations can access integrations and apps
			"src": ["tag:server", "tag:integration"],
			"dst": ["tag:integration", "tag:app"],
			"ip":  ["*"],
		},
	],
}

Over the past week I’ve been setting up a private Forgejo instance behind Tailscale, complete with an actions runner that runs things using a docker-in-docker container. I didn’t want the runner knowing anything about Tailscale, so I had it configured to speak to Forgejo direct over HTTP (forgejo:3000) instead of using full Tailscale HTTPS URL that I use when accessing it (http://git.example-net.ts.net/)¹.

Everything was going fine, until I forgot to do that translation… and it worked. My Forgejo action runners could access anything on my tailnet. I run several things on Tailscale that just have authentication turned off, on the basis that only authorised devices can access them. Things like the admin interface for this website. I definitely didn’t intend for any workflow I run on my git server to have access to edit my website!

This wasn’t just limited to Forgejo, either. Any docker container I was running could access the tailnet. In hindsight it’s fairly obvious why: the host is running Tailscale, connected as a node tagged with my server tag. That creates a tailscale0 interface, and automagically sets up iptables rules to route Tailscale traffic over the interface. Docker also automagically sets up iptables rules to bridge traffic, and apparently these two sets of rules interact in such a way that traffic from Docker containers is allowed to route via the tailscale0 interface.

I say it’s fairly obvious in hindsight — there’s no reason why Docker would special case any particular host interface after all — but it still feels pretty surprising. Because both bits of software inject their own iptables rules, I never really had a good mental model for how they interact. The host Tailscale node was a completely separate building block to Docker. It would be a pain to use either of them if they didn’t do these rules, but it’s also one of the reasons I don’t really like “magical” things².

There are lots of ways to fix this, but none of them feel particularly great. You can configure both Tailscale and Docker to not automatically fiddle with iptables and handle the rules yourself, but I really hate dealing with iptables³. As a stopgap I did hold my nose and add some iptables rules to drop traffic to the tailscale0 interface if it originated from the IP ranges that Docker was configured to use:

iptables -I DOCKER-USER -s 192.168.0.0/16 -o tailscale0 -j DROP
iptables -I DOCKER-USER -s 172.17.0.0/12 -o tailscale0 -j DROP

The DOCKER-USER chain is a nice little escape hatch; it comes before the main auto-generated DOCKER chain, and Docker leaves the rules in it alone.

So I added these rules, and felt pretty good about myself, and then… everything started breaking in weird ways. After some debugging I realised the problem was DNS⁴. The server’s DNS resolver is 100.100.100.100, a special Tailscale address. This is so that it can resolve tailnet hostnames via MagicDNS (and so I don’t have to configure my custom DNS servers manually on each device; Tailscale does it for me). My new iptables rules inadvertently dropped all the DNS packets coming from docker containers. D’oh.

Obviously the solution here is to double down and add MORE iptables rules:

iptables -I DOCKER-USER -s 192.168.0.0/16 -d 100.100.100.100 -o tailscale0 -j ACCEPT
iptables -I DOCKER-USER -s 172.17.0.0/12 -d 100.100.100.100 -o tailscale0 -j ACCEPT

This got DNS working again, but it all feels a bit gross. Not least because to actually make these persist you need to use iptables-save, and then you also get all the rules that both Docker and Tailscale have inserted. I came across a script to filter out the Docker ones, but… yuck⁵.

I realised a cleaner idea might just be to lock down what server tagged nodes could access within Tailscale itself. That way I can avoid touching iptables at all. It’s handy to be able to curl services from the host when debugging, but it’s not really necessary. So I removed that access, and… stuff broke again. I’m using my Forgejo instance as a registry for some of the docker images I run, so the docker daemon needs to be able to reach it. I ended up making a new tag for infrastructure, which can be accessed from server devices. This does still allow all the docker containers to reach Forgejo, but I already have it set up with appropriate access controls and public/private repository splits. Forgejo is a service designed to run publicly, so this seems a reasonable trade-off for convenience. I used the tests feature of Tailscale’s ACL config to make sure I’d got the rules right:

{
	"tests": [
		{
			// Servers can only access infrastructure
			"src":   "tag:server",
			"proto": "tcp",
			"allow": [
				"tag:infrastructure:8080",
			],
			"deny": [
				"100.84.16.43:8080",
				"me@example.com:8080",
				"tag:server:8080",
				"tag:app:8080",
				"tag:integration:8080",
			],
		},
	],
}

The whole situation still feels a bit messy. If I ever get around to switching to nftables I might loop back and manually craft some rules for routing traffic, instead of leaving Tailscale and Docker to do their own thing.

I discovered later on that logging into the container registry at forgejo:3000 actually issued a redirect to https://git.example-net.ts.net/ so this was all basically for naught… ↩︎
I didn’t use Tailscale’s MagicDNS for a long time just because the word “magic” put me off. Only when I eventually got around to learning how it worked, and seeing that it wasn’t really that magical under the hood, did I change my mind. ↩︎
nftables seems far better in lots of ways, but I can’t really be bothered migrating. Maybe next time I reimage the server for whatever reason… ↩︎
It’s always DNS… ↩︎
Again, nftables would almost certainly help here. It actually has (gasp) configuration files. But again, I really didn’t want to spend the time migrating. ↩︎

Docker reverse proxying, redux

2022-12-06T00:00:00Z

Six years ago, I described my system for configuring a reverse proxy for docker containers. It involved six containers including a key-value store and a webserver. Nothing in that system has persisted to this day. Don’t get me wrong – it worked – but there were a lot of rough edges and areas for improvement.

Microservices and their limitations

My goal was to follow the UNIX philosophy of “do one thing and do it well”. Unfortunately, that doesn’t really work when applied to network services that have to interact with one and other. UNIX tools are built upon a common file system and simple data passed over STDIN. Microservices don’t have that shared foundation. You could make one: companies that use microservices in anger often have a team that deals with the “developer experience” of creating and using microservices. But as a solo developer that’s not something I wanted to spend my time doing.

This became very apparent when trying to debug issues. In the UNIX world, if your series of commands piped together does something strange you can simply echo the data at various stages. Not so much when that data is flying around on a network, going into and out of things like etcd. Trying to figure out why a certificate hadn’t been acquired was a case of searching through logs from four containers, none of which had particularly good logging. There are many ways to get insight into what’s happening with microservices but, again, that’s not something I wanted to do myself.

Over time, and with experience in other projects, I came to realise that microservices only really make sense if you’re unable to deploy a monolith. For tech companies this naturally happens when different teams contribute to the same service: splitting it out into smaller services that are wholly owned by individual teams makes sense. For solo developers, that never happens. You can still gain the other benefits of microservices – such as code separation and having clearly defined APIs – by sticking to certain coding standards.

Proxy inconveniences

As well as being unhappy with the microservice nature of the solution, I wasn’t pleased with nginx. If you requested an unknown domain, nginx would use the first server block in its config to serve a response, instead of sending an “unrecognised name” alert as I wanted. It was a minor issue, but it irked me.

So from nginx I switched to haproxy. It has a strict-sni option when configuring TLS connections which makes it behave properly. It also performs a lot better for this type of workload than nginx. All was well for a while, but then I started getting alerts that requests were occasionally failing. I couldn’t reproduce the issue, but my nightly jobs to build and push containers managed to hit it nearly every night, causing them to fail.

After some investigation, I found that the haproxy developers had refactored the header parsing code, and neglected to properly reset flags when multiple requests were sent over the same connection. There was a patch, but it wasn’t released. No problem, I thought, I’ll just cherry-pick it onto the last release… Except that haproxy use Git in the most convoluted manner I’ve ever seen – they have one repository per release. This makes it harder to patch, but it also made me question whether I trusted them to ship stable software: there were no tests for the header parsing code (which is both fundamental and finicky, the perfect target for tests), the source code management was weird, and they didn’t seem in any rush to patch this bug.

Not long after that issue, Greg managed to encounter another bug where haproxy returned a 500 error whenever the upstream server replied with a particular, perfectly valid, header. The die was cast – it was time to move to something else.

Not Invented Here syndrome

Looking for a new solution, there were many more options than back in 2016. I’m still convinced, however, that anything exposed to the Internet should not have access to run docker containers. It’s the modern equivalent of running a CGI script as root. That single requirement eliminates most off-the-shelf solutions. What do you do when nothing quite meets your specific requirements? You make something yourself! My new solution has two components: Dotege and Centauri.

Dotege is a replacement for the microservices that monitored containers and obtained certificates. It’s fundamentally a templating engine - whenever the containers change, it evaluates a template and saves the result to disk. The template has access to details about the containers, their labels, ports, and so on. Dotege can also obtain certificates from Let’s Encrypt, and raise a signal against another process whenever the template or certificates change. I used this to generate the configuration and certificates used by haproxy for a while, and more recently changed the template so that it works for Centauri.

Centauri is my own reverse proxy. It’s configured using a simple text file and can also obtain certificates from an ACME provider. It doesn’t serve static content, has no knowledge about docker, and avoids the other bells and whistles that adorn most reverse proxies. It also has good test coverage to ensure that I don’t, say, accidentally break header parsing.

As a software engineer I enjoy writing software, but I also enjoy running simple, easy to understand software. That’s what I’ve achieved here: it’s very easy to identify where the problem is if anything goes wrong, both are small Go programs rather than vast sprawling C monstrosities, and their interaction is primarily through a file written to disk that can be inspected or edited as needed.

Debugging beyond the debugger

2019-05-08T00:00:00Z

Real-life debugging tools

Most programming — and sysadmin — problems can be debugged in a fairly straight forward manner using logs, print statements, educated guesses, or an actual debugger. Sometimes, though, the problem is more elusive. There’s a wider box of tricks that can be employed in these cases but I’ve not managed to find a nice overview of them, so here’s mine. I’m mainly focusing on Linux and similar systems, but there tend to be alternatives available for other Operating Systems or VMs if you seek them out.

Networking

tcpdump

tcpdump prints out descriptions of packets on a network interface. You can apply filters to limit which packets are displayed, chose to dump the entire content of the packet, and so forth.

Typical usage might look something like:

# tcpdump -nSi eth0 port 80
tcpdump: verbose output suppressed, use -v or -vv for full protocol decode
listening on eth0, link-type EN10MB (Ethernet), capture size 262144 bytes
16:03:35.577781 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [S], seq 2815779044, win 64800, options [mss 1440,sackOK,TS val 2378811665 ecr 0,nop,wscale 7], length 0
16:03:35.586853 IP6 2001:db8::2.80 > 2001:db8::1.54742: Flags [S.], seq 1522609102, ack 2815779045, win 28560, options [mss 1440,sackOK,TS val 3063610173 ecr 2378811665,nop,wscale 7], length 0
16:03:35.586877 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [.], ack 1522609103, win 507, options [nop,nop,TS val 2378811674 ecr 3063610173], length 0
16:03:35.620678 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [P.], seq 2815779045:2815779399, ack 1522609103, win 507, options [nop,nop,TS val 2378811708 ecr 3063610173], length 354: HTTP: GET / HTTP/1.1

Here you can see the start of a plaintext HTTP request: the three-way handshake as the TCP connection is established followed by a GET request. Even if the data is encrypted as it will be in most cases, it’s often useful to see the “shape” of the transmissions: did the client start sending data when it connected, did the server ever respond, etc.

Daniel Miessler has a good tutorial on tcpdump if you’re not familiar with it and don’t want to jump straight into the man page.

… with Docker

Docker sets up separate network namespaces for each container. To see the traffic across the interfaces of a single container you can nsenter the container’s network namespace:

# nsenter -t $(docker inspect --format '{{.State.Pid}}' my_container) -n tcpdump -nS port 80

This retrieves the PID for the container, and tells nsenter to enter the network (-n) namespace from the given target (-t) PID, and then run the given command (in this case tcpdump ...).

openssl s_client / s_server

When a connection is using TLS it’s often useful to try connecting to the server and see what certificate it presents, algorithms it negotiates, and so forth. OpenSSL offers two useful subcommands which can help with this: s_client for connecting as a client, and s_server for listening to connections.

For example, using s_client to connect to google.com on the standard HTTPS port shows us details about the server cert and its verification status:

$ openssl s_client -connect google.com:443
CONNECTED(00000003)
depth=2 OU = GlobalSign Root CA - R2, O = GlobalSign, CN = GlobalSign
verify return:1
depth=1 C = US, O = Google Trust Services, CN = Google Internet Authority G3
verify return:1
depth=0 C = US, ST = California, L = Mountain View, O = Google LLC, CN = *.google.com
verify return:1
---
Certificate chain
 0 s:C = US, ST = California, L = Mountain View, O = Google LLC, CN = *.google.com
   i:C = US, O = Google Trust Services, CN = Google Internet Authority G3
 1 s:C = US, O = Google Trust Services, CN = Google Internet Authority G3
   i:OU = GlobalSign Root CA - R2, O = GlobalSign, CN = GlobalSign
---
# ...

Whereas connecting to my webserver and providing an unknown host in the SNI field results in an SSL alert 112 (“The server name sent was not recognized”) and no server certificate is sent:

$ openssl s_client -connect chameth.com:443 -servername example.com
CONNECTED(00000003)
140384831313024:error:14094458:SSL routines:ssl3_read_bytes:tlsv1 unrecognized name:../ssl/record/rec_layer_s3.c:1536:SSL alert number 112
---
no peer certificate available
---
# ...

Often if you hit this kind of alert in an application the exact error will be lost somewhere in the many layers between the SSL library and the logs, so being able to directly connect and test can help diagnose a lot of issues.

Once a connection is established you can read and write plain text and it will be encrypted and decrypted automatically.

Java apps

If a Java app is involved in the connection, you can enable a lot of built-in debugging with a simple JVM property: javax.net.debug. You can tweak what exactly gets logged, but the easiest thing to do is just set the property to all and you’ll see information about certificate chains, verification, and packet dumps:

$ java -Djavax.net.debug=all -jar ....
# ...
found key for : duke
chain [0] = [
[
  Version: V1
  Subject: CN=Duke, OU=Java Software, O="Sun Microsystems, Inc.",
  L=Cupertino, ST=CA, C=US
# ...

More information about Java’s debugging options is available on docs.oracle.com.

Thread and core dumps

Higher-level languages frequently provide an interactive way to dump the current execution state of all of their threads (a “thread dump”). This is useful to spot deadlocks, some types of race conditions, and as a quick and dirty method of investigating hangs or excessive CPU usage.

With both Java and Go applications you can send a QUIT signal to have a thread dump printed out; Go applications will quit after doing so, Java ones will carry on running. At most terminals you can hit Ctrl and \ to send a QUIT signal.

For Java you can also use the jstack tool from the JDK to dump threads by PID; this can be useful if the application is running in the background or has redirected sysout:

$ jstack 8321
Attaching to process ID 8321, please wait...
Debugger attached successfully.
Client compiler detected.

Thread t@5: (state = BLOCKED)
 - java.lang.Object.wait(long) @bci=-1107318896 (Interpreted frame)
 - java.lang.Object.wait(long) @bci=0 (Interpreted frame)
 - java.lang.ref.ReferenceQueue.remove(long) @bci=44, line=116 (Interpreted frame)
 - java.lang.ref.ReferenceQueue.remove() @bci=2, line=132 (Interpreted frame)
 - java.lang.ref.Finalizer$FinalizerThread.run() @bci=3, line=159 (Interpreted frame)

# ...

A core dump provides more complete information about the state of a process, but is often more complex to interpret. The gcore utility from GDB will create a core dump of a process with a given PID. You can then generally load the core file using your normal debugger, depending on the language in question.

System calls

strace is the swiss army knife for seeing what a process is doing. It details each system call made by a program (you can filter them down, of course). For example:

$ strace -e read curl https://google.com/
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0 \236\0\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P!\0\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\200l\2\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20Q\0\0\0\0\0\0"..., 832) = 832
# ...
read(3, "\0\0\0\0\0\0\0\4\25\345\366\302\273sE6\365wI\225\321|\3435Z\362\216\372\215\251aO"..., 253) = 253
<HTML><HEAD><meta http-equiv="content-type" content="text/html;charset=utf-8">
<TITLE>301 Moved</TITLE></HEAD><BODY>
<H1>301 Moved</H1>
The document has moved
<A HREF="https://www.google.com/">here</A>.
</BODY></HTML>
read(3, "\27\3\3\0!", 5)                = 5
# ...

Brendan Gregg has a nice guide on strace and alternatives.

… with docker

When the application is running in docker you can usually just strace it from the host with the correct PID (from e.g. docker inspect --format '{{.State.Pid}}' my_container). Sometimes you may need to trace the startup of an application though, which is a bit trickier. Instead you can run a new container using the same PID namespace as your target, and the permissions needed to strace:

$ docker run --rm -it --pid=container:my_container \
  --net=container:my_container \
  --cap-add sys_admin \
  --cap-add sys_ptrace \
  alpine

From within the new container you can install strace, and trace any running program within the target container using strace -p as normal. To start a new program you need access to the target container’s filesystem, which you can get to via /proc/1/root (PID 1 being the main process that docker started in the target container).

Files

Sometimes the problem might relate to file access. There are a couple of straight forward — but nonetheless useful — tools which might help here. inotifywait uses the Linux inotify subsystem to watch files or directories for operations. For example:

$ inotifywait -mr site/content
Setting up watches.  Beware: since -r was given, this may take a while!
Watches established.
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ OPEN 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ CLOSE_WRITE,CLOSE 2019-05-08-debugging-beyond-the-debugger.md
# ...

Here the -m switch makes inotifywait monitor the files forever (instead of exiting on the first modification, which is the normal behaviour) and r makes it recurse into the directory and monitor each file and subdirectory in there.

If you want to see what processes currently have a file open, fuser is the go-to tool. For example:

$ fuser -v /
                     USER PID ACCESS COMMAND
/:                   root     kernel mount /
                     chris      2961 .rc.. systemd
                     chris      2986 .r... gdm-x-session
                     chris      2994 .r... dbus-daemon
                     chris      3001 .r... gnome-session-b
# ...

Honourable mentions

These aren’t really debugging tools, but I feel it’s worth mentioning as they often feature somewhere along the debugging-of-weird-problems journey.

I’ve seen some weird and wonderful problems happen because a disk is full, so a quick df early on in the debugging process never hurts. Some apps may hang, some may corrupt their config, some may fall over and die; sometimes the manner in which they fail doesn’t obviously point to a disk space issue.

Another issue that comes up now and then — especially inside VMs or other environment that don’t have a decent amount of “noise” happening — is entropy exhaustion. A quick look at /proc/sys/kernel/random/entropy_avail should be enough to confirm that everything is ticking along nicely. If it’s exceedingly low then you may find that anything involving random number generation stalls (TLS connections for example).