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The Case of the Unchanging Config

2026-04-09T00:00:00Z

Last week I was attempting to make it so I could share pictures on IRC directly from my client. This sounds simple, but it involves a bouncer¹ that proxies the request to a standalone image hosting service that I had to modify to be compatible. At one point my testing loop was:

Make a change to the hosting service
Commit it
Tag a new release
Wait for it to build
Update the version I’m running on my server
Reconfigure the bouncer to pass the new parameter or change the URL or whatever
Try uploading a photo from my phone
Realise I’ve overlooked something and go back to step one

I could have set up a local copy of everything and tested it sensibly. I should have set up a local copy of everything and tested it sensibly. But it seemed like such a trivial change, and setting up the whole environment seemed like such a pain. After the third or so iteration of failure I was pretty annoyed with myself, computers, and basically everything.

My biggest annoyance was that my bouncer would not pick up the new URL from the config when I changed it. It’s meant to reload the config when it receives a SIGHUP, and it claimed to in the logs, but I could clearly see it was still hitting the old URL. Restarting the bouncer to update the config is a pain, as it disconnects me from all the IRC networks, and has to reconnect to them all, reauthenticate, etc. It also mildly spams everyone who shares a channel with me².

When I finally got everything working I had a look at the bouncer source, and thought I’d spotted the issue. I raised a bug report, ending in this remark:

It looks like the config is reloaded properly, but the handler for uploads is created once at startup and has its own copy of the uploader, so effectively snapshots the config to whatever it is at startup:

fileUploadHandler := http.HandlerFunc(func(w http.ResponseWriter, r *http.Request) {
    cfg := srv.Config()
    h := fileupload.Handler{
        Uploader:    cfg.FileUploader,
        DB:          db,
        Auth:        cfg.Auth,
        HTTPOrigins: cfg.HTTPOrigins,
    }
    h.ServeHTTP(w, r)
})

I’m not quite sure what I thought I saw there, but that’s not right. I want to call it a hallucination, but that feels like a very overloaded word these days. I guess I was just seeing what I wanted to see, and that was a good excuse to stop investigating. Still, even if I misidentified the cause, the bug was still present, right? … Right?

The Science of Deduction

When the developer got back and said he couldn’t reproduce my issue, I went back to my install and immediately reproduced it. With a calmer head, I figured it was probably something with my particular set up. First thing to check: am I actually running the version I think I am?

Unfortunately the bouncer doesn’t actually seem to expose the version anywhere that I can see. It’s not in the logs, it doesn’t have a -version flag, and none of the IRC-based status commands seem to include it. But I know it’s a Go app, and I know Go embeds the version information. go version -m <binary> will dump it all out, but the binary is inside a Docker image, and the Docker image is one of my nice, minimal, artisanal ones so doesn’t ship a go binary. No problem, docker compose cp bouncer:/bnc ./bnc yoinks the binary out of the container, and then dumping the version shows that, yes, I am running the version I thought I was. Hmm.

The next tool I reached for in my toolbox was strace. Maybe it’s not actually reading the file for some reason? I immediately executed strace -p <pid> -e trace=openat,open,read,pread64 -f without having to look any part of that up. Yep. Definitely. Then I edited the config, HUP’d the bouncer, and saw that it was… reading the config file. As it’s meant to. By default strace truncates strings to 32 bytes, so I couldn’t actually see the line I’d changed. Some more definitely-not-RTFMing later, and rerunning it with an extra -s 65536 let me see the full config. Surprise! The config hadn’t changed!

To confirm my findings, I used docker compose cp again, this time yoinking the config file from inside the container. The inside config file was definitely different to the outside config file. What? My hypothesis at this point was “something something Docker nonsense”. I mount the config as read-only, and was wondering if that meant that Docker was doing something weird instead of just bind mounting it. A quick trip to /proc/<pid>/mounts showed that it was, in fact, not doing anything weird, and was just bind mounting it.

If the file is bind mounted, then surely it’s the same file? I ran stat on the file on the host, noted the inode number, then pondered how to actually run stat on the file inside the container, given the aforementioned awkwardly minimal image. The solution was easy: access it via /proc/<pid>/root/. I could’ve saved myself a bunch of docker compose cp if I’d thought about that earlier. Oh well. The inode of that file was different. What?

The answer was DNS. It’s always DNS. Oh, sorry, force of habit. I meant the answer was vim. I was editing the config in vim, and when it saves files, by default, it writes the new content to a temporary file and does an atomic rename. That’s normally a good thing: it prevents corruption if the write fails midway through³. In this case, though, that means the new file has a new inode. Bind mounting a file binds to the inode, so the container just keeps clutching onto the original config from when it was started, blissfully unaware that the party has relocated down the street.

This problem is likely to happen whenever you bind mount a file into a container. When I mentioned this to a friend, he immediately responded “oh yeah, never do that”, and went on to describe the horrible hacks he’s had to add to Ansible to sidestep the issue. The nicer solution is to just bind mount an entire directory if you can, as then it doesn’t matter what happens to the files within it. I really like having the config files sat alongside the Docker compose files, though; having to create a directory just to work around some bind mount weirdness upsets me.

Now I knew what the problem was, I found there was an issue raised against Docker twelve years ago⁴. The first response was “that’s expected”, and I fully agree with the author: “respectfully, that might be expected by you, but it was not expected by me”!⁵ As a result of the issue they added a nice note to the docs:

Note: Many tools used to edit files including vi and sed --in-place may result in an inode change. Since Docker v1.1.0, this will produce an error such as “sed: cannot rename ./sedKdJ9Dy: Device or resource busy”. In the case where you want to edit the mounted file, it is often easiest to instead mount the parent directory.

But in the intervening twelve years, both the note and the functionality described have gone missing. Ho-hum.

I found it interesting how I’ve only just hit this problem, given how long I’ve used Docker. But I realised that almost everything I run I’m happy to just restart. Cattle, not pets, and so on. My IRC bouncer is one of the few exceptions to that. The only other thing I regularly hot reloaded was Centauri, my reverse proxy, but that had a whole config directory mounted because it was shared between containers, so nicely sidestepped the foot-gun.

So lesson learnt: check for weird bind mount issues before raising issues about config hot reloading. It’ll join the esteemed company of “maybe the drive is full and causing completely unrelated problems?”, “perhaps everything is dog slow because the kernel ran out of entropy?”, and “did systemd sneakily take over that functionality while you weren’t looking?” in the troubleshooting checklist.

An IRC bouncer is basically an always-on proxy. It connects to the IRC networks for you, then your clients connect to your bouncer. The bouncer can then send incoming messages to all your different clients, cache them when you’re offline and replay them later, and lots of other nice things people take for granted in their chat apps these days. ↩︎
Join/part/quit spam is part of IRC, and clients have ways of handling it, but I still feel bad about doing it excessively. ↩︎
You can disable this in vim by setting backupcopy=yes. Good luck redoing all the debugging if you ever accidentally remove that from your vimrc, though! ↩︎
Which is weird, because Docker can’t possibly be that old. That would make me much older than I’m prepared to accept. ↩︎
If you read the thread they didn’t actually mean to sound so dismissive, but it’s still pretty funny. “Yes, it’s expected that the foot-gun causes your foot to hurt. Duh. What did you expect?” ↩︎

An interesting Tailscale + Docker gotcha

2026-01-29T00:00:00Z

As I’ve written about before, I use Tailscale for a lot of things. I thought I had it set up in a reasonably secure manner, but I recently noticed a problem.

I use Tailscale’s ACLs to limit what each node can access, based on the tags I apply to it. So an app node can’t access anything via Tailscale, while an integration or server node can access things tagged with either app or integration. This is expressed pretty simply in the Tailscale ACL JSON:

{
	"tagOwners": {
		// Servers that can be SSH'd into
		"tag:server": [],
		// Applications that are exposed on tailscale but never connect out
		"tag:app": [],
		// Things which talk to other services over tailscale (connecting to apps etc)
		"tag:integration": [],
	},
	"grants": [
		{
			// Users can access everything
			"src": ["autogroup:member"],
			"dst": ["*"],
			"ip":  ["*"],
		},
		{
			// Servers and integrations can access integrations and apps
			"src": ["tag:server", "tag:integration"],
			"dst": ["tag:integration", "tag:app"],
			"ip":  ["*"],
		},
	],
}

Over the past week I’ve been setting up a private Forgejo instance behind Tailscale, complete with an actions runner that runs things using a docker-in-docker container. I didn’t want the runner knowing anything about Tailscale, so I had it configured to speak to Forgejo direct over HTTP (forgejo:3000) instead of using full Tailscale HTTPS URL that I use when accessing it (http://git.example-net.ts.net/)¹.

Everything was going fine, until I forgot to do that translation… and it worked. My Forgejo action runners could access anything on my tailnet. I run several things on Tailscale that just have authentication turned off, on the basis that only authorised devices can access them. Things like the admin interface for this website. I definitely didn’t intend for any workflow I run on my git server to have access to edit my website!

This wasn’t just limited to Forgejo, either. Any docker container I was running could access the tailnet. In hindsight it’s fairly obvious why: the host is running Tailscale, connected as a node tagged with my server tag. That creates a tailscale0 interface, and automagically sets up iptables rules to route Tailscale traffic over the interface. Docker also automagically sets up iptables rules to bridge traffic, and apparently these two sets of rules interact in such a way that traffic from Docker containers is allowed to route via the tailscale0 interface.

I say it’s fairly obvious in hindsight — there’s no reason why Docker would special case any particular host interface after all — but it still feels pretty surprising. Because both bits of software inject their own iptables rules, I never really had a good mental model for how they interact. The host Tailscale node was a completely separate building block to Docker. It would be a pain to use either of them if they didn’t do these rules, but it’s also one of the reasons I don’t really like “magical” things².

There are lots of ways to fix this, but none of them feel particularly great. You can configure both Tailscale and Docker to not automatically fiddle with iptables and handle the rules yourself, but I really hate dealing with iptables³. As a stopgap I did hold my nose and add some iptables rules to drop traffic to the tailscale0 interface if it originated from the IP ranges that Docker was configured to use:

iptables -I DOCKER-USER -s 192.168.0.0/16 -o tailscale0 -j DROP
iptables -I DOCKER-USER -s 172.17.0.0/12 -o tailscale0 -j DROP

The DOCKER-USER chain is a nice little escape hatch; it comes before the main auto-generated DOCKER chain, and Docker leaves the rules in it alone.

So I added these rules, and felt pretty good about myself, and then… everything started breaking in weird ways. After some debugging I realised the problem was DNS⁴. The server’s DNS resolver is 100.100.100.100, a special Tailscale address. This is so that it can resolve tailnet hostnames via MagicDNS (and so I don’t have to configure my custom DNS servers manually on each device; Tailscale does it for me). My new iptables rules inadvertently dropped all the DNS packets coming from docker containers. D’oh.

Obviously the solution here is to double down and add MORE iptables rules:

iptables -I DOCKER-USER -s 192.168.0.0/16 -d 100.100.100.100 -o tailscale0 -j ACCEPT
iptables -I DOCKER-USER -s 172.17.0.0/12 -d 100.100.100.100 -o tailscale0 -j ACCEPT

This got DNS working again, but it all feels a bit gross. Not least because to actually make these persist you need to use iptables-save, and then you also get all the rules that both Docker and Tailscale have inserted. I came across a script to filter out the Docker ones, but… yuck⁵.

I realised a cleaner idea might just be to lock down what server tagged nodes could access within Tailscale itself. That way I can avoid touching iptables at all. It’s handy to be able to curl services from the host when debugging, but it’s not really necessary. So I removed that access, and… stuff broke again. I’m using my Forgejo instance as a registry for some of the docker images I run, so the docker daemon needs to be able to reach it. I ended up making a new tag for infrastructure, which can be accessed from server devices. This does still allow all the docker containers to reach Forgejo, but I already have it set up with appropriate access controls and public/private repository splits. Forgejo is a service designed to run publicly, so this seems a reasonable trade-off for convenience. I used the tests feature of Tailscale’s ACL config to make sure I’d got the rules right:

{
	"tests": [
		{
			// Servers can only access infrastructure
			"src":   "tag:server",
			"proto": "tcp",
			"allow": [
				"tag:infrastructure:8080",
			],
			"deny": [
				"100.84.16.43:8080",
				"me@example.com:8080",
				"tag:server:8080",
				"tag:app:8080",
				"tag:integration:8080",
			],
		},
	],
}

The whole situation still feels a bit messy. If I ever get around to switching to nftables I might loop back and manually craft some rules for routing traffic, instead of leaving Tailscale and Docker to do their own thing.

I discovered later on that logging into the container registry at forgejo:3000 actually issued a redirect to https://git.example-net.ts.net/ so this was all basically for naught… ↩︎
I didn’t use Tailscale’s MagicDNS for a long time just because the word “magic” put me off. Only when I eventually got around to learning how it worked, and seeing that it wasn’t really that magical under the hood, did I change my mind. ↩︎
nftables seems far better in lots of ways, but I can’t really be bothered migrating. Maybe next time I reimage the server for whatever reason… ↩︎
It’s always DNS… ↩︎
Again, nftables would almost certainly help here. It actually has (gasp) configuration files. But again, I really didn’t want to spend the time migrating. ↩︎

Home Automation Without the Megacorps

2025-05-21T00:00:00Z

I first experimented with home automation in 2016, by picking up a Samsung “SmartThings” hub. It was terrible. The UI to configure things was slow and clunky, firmware updates were applied whether you wanted them or not, and everything stopped working if their cloud services stopped. You were also locked into whatever integrations they deigned to support, of course. After that broke for the umpteenth time I scaled back and for years the closest I got to home automation was a couple of Hue bulbs.

Recently I’ve been building it out again, though. This time using off-the-shelf components that interop using Zigbee, open-source software, and some code I wrote myself. It’s great; it runs entirely locally and has had basically zero downtime. The Zigbee ecosystem lets me integrate all sorts of things without having to spend lots of money on “smart” alternatives. I think I’ve spent less on this incarnation than I did on the original SmartThings hub all those years ago (even without adjusting for inflation!).

My current setup

I run everything on a Raspberry Pi 4, with a Sonoff USB Zigbee adapter based on the CC2652P chipset¹. Interfacing with the Zigbee stack is handled by zigbee2mqtt (z2m for short), an open-source project that basically bridges your devices to an MQTT broker². When a device reports some data, it will send a new message over MQTT; when you want to make a device do something you just post a message back. It’s incredibly lightweight, but supports a huge array of devices out of the box. And as it’s just using MQTT, it’s trivial to integrate with other software or build on top of.

I know a lot of people building out this kind of home automation use Home Assistant, but I don’t get on with it terribly well. It felt incredibly sluggish, and the entire project is just a bit… much. I want a binary or package or docker image I can just run, not an entire operating system. That’s not how computers are meant to work! In contrast, z2m is simple to set up, super light weight and responsive.

Anyway. z2m exposes Zigbee devices over MQTT, so I wrote some code in Go to connect to the MQTT broker, and listen to the messages. It’s grown a bit beyond this now, and I’m skipping some boring bits like error handling and JSON parsing, but at first I had something like:

for {
    message, topic, err := c.ReadSlices()
    
    if string(topic) == "zigbee2mqtt/desk-button" {
        if strings.Contains(message, "single") {
            c.Publish(nil, []byte("{\"state\": \"TOGGLE\"}"), "zigbee2mqtt/room-lights/set")
        }
    }
}

I think I actually made this harder to read by trying to simplify it here, but hopefully you can follow that it was relatively straight forward to listen for a particular action to happen (in this case me “single”-pressing on the device called “desk-button”) and then make another device do something in response (toggling the state of the “room-lights” device).

So what actually are these devices? At present in z2m I have the following:

Some generic buttons
An air quality sensor (USB powered), and a separate temperature sensor (battery powered)
A light switch
Some 240V relay modules, that I use to turn non-smart devices on and off
Some USB relay modules, for the same purpose
Some “smart” plugs that I mostly use to monitor power usage
A motorised blind roller

I think all of these are either Tuya or Moes branded, and were all sourced from AliExpress. You can get the same things from Amazon or elsewhere, but they tend to be 3-4x more expensive for the same product.

One of the cool things about Zigbee devices is that the powered ones work together to create a mesh network, so you don’t have to worry about network repeaters or signal strength like you do with Wi-Fi networks. z2m even makes a map showing the connections:

The network map produced by z2m. You can see how all the powered devices form a mesh that the lower power ones can connect to.

Some interesting automations

A Zigbee relay spliced into the power cable for the fan

So what do I actually do with all of this? Some of it is just what I’ll call “laziness automation”: I want to be able to turn on the lights without getting up and walking to the light switch. So there’s a Zigbee button on my desk that does it. Then there are some less manual automations: my blinds are automatically closed at sunset³, for example. It feels a bit trivial, but it’s surprisingly nice just not to have to think about that at all.

Another nice quality of life automation is the light I have above my monitor. It’s USB powered, and I now have it going through a Zigbee USB relay that lets it be toggled on and off. Then I have a small agent running on my desktop that turns the light on when the computer is unlocked, and off when it locks or shuts down. I keep meaning to make a “film mode” that detects when I’m watching a film, and turning all the lights and blinds down, but I haven’t got around to it yet.

The most complex automation is probably for a window fan. It’s not smart in any way, so I cut the power cable and inserted a Zigbee relay. The whole thing is housed in a little project box to keep it secure. The relay basically acts as a switch: the live wire leading to the fan runs to the “normally open”⁴ contact, while the upstream power goes to “common”. When the relay is told to turn the fan on, the two get connected and the fan gets power. Oh, it’s also not actually a window fan, but I designed and 3D printed some adapters so that it sits right in the window.

So now we have a window fan that can be turned off and on automatically. But I don’t want to have to press a button to do that. I’m lazy, remember? Instead, I made it so that the Go code constantly monitors the temperature reported by the air quality sensor, and queries the free OpenWeatherMap API to get the rough temperature outside. It can then turn the fan on if the room is too hot, and outside is cool enough to make a difference (there’s no point in blowing hotter air in!).

A graph of room temperature, showing the effect of the fan being turned on and off

I don’t want it to do that all the time though. The room doesn’t need to be cooled if I’m not around. There are various Zigbee presence sensors you can get, but the cheaper ones seem to be of dubious quality. Instead, I wrote some code to guess whether I’m present. It uses the state of the monitor light as a proxy for “is the computer in use”, and then makes some guesses based on the last time the computer was used and the current time (if I turn the computer off at midnight it probably means I’m going to sleep; if I turn it off at 2pm it probably means I’m going out somewhere).

You can see in the graph that the fan has a decent impact on temperature. I coded it to cool the room to 19 degrees, but then not turn on again until it was above 20. This prevents it flip-flopping on and off constantly. You can clearly see the pattern in the graph, as it actively cools and then slowly the room warms back up. This arrangement is much better than being woken up at 5am because it’s painfully cold. Trust me.

Bonuses: metrics and 3D printer

One of the things my custom Go code does is collate all the various stats reported by the Zigbee devices, and inserts them into a VictoriaMetrics database. I originally hosted this on the Pi itself, and it performed fine, but I’ve since moved it onto a server so that I can use it for some other things as well.

I set up Grafana to point to VM, and can create dashboards showing power usage, what devices are turned on when, and a bunch of environmental conditions. This also makes it easy to spot how good the data coming from the devices are. For example, the air quality sensor reports a figure for the amount of Carbon Dioxide in the air, as well as the amount of Volatile Organic Compounds (VOCs). The graphs are basically identical, but on a different scale. It turns out this particular device has no actual way of detecting CO₂, so it just “calculates” it from the VOCs figure. Useful to know if you want to actually use that data.

Recently I came across a go library for interacting with Bambu Lab printers, so I’ve also hooked that into my automation. It exports metrics about the printer, so I now have a way of seeing what’s going on when I’m not physically present⁵. I even added a HTTP endpoint (exposed over Tailscale) that shows pictures from the built-in camera.

On the automation front, I’ve made it automatically turn off the printer’s light when it finishes a print, and also added push notifications via PushOver whenever the state changes. No longer will I be sat in another room blissfully unaware it ran out of filament seconds after I walked out the door!

Was it worth it?

These days you could probably just buy some kind of ‘smart home’ hub that works well enough, and do most of what I’ve done with a lot less effort and no coding. I’m still of the opinion that for something so essentially local, it should itself be managed entirely locally. I don’t trust companies like Google or Amazon not to kill their products, or change or remove an API I rely on.

Obviously the “Not Invented Here” approach of coding everything yourself doesn’t suit everyone, but as someone who enjoys coding and enjoys having things work just so it works very well for me.

It turns out the chipset is important. I initially used a similar Sonoff dongle that used a CC2531 chipset, and its performance wasn’t great. It often failed to pair with new devices, and dropped links to existing ones. The zigbee2mqtt docs do explicitly advise against the CC2531 chips for that reason. At the time they recommended CC2652Ps, so that’s what I went with. If you’re starting new I’d go with whatever their latest recommendation was. ↩︎
MQTT is basically a network protocol for publishing and subscribing to arbitrary messages. A broker is the thing that sits in the middle and routes the messages. I use Mosquitto but any will do. ↩︎
They originally also re-opened at sunrise but that was a terrible mistake. Who knew the sun rose so early?! ↩︎
“open” meaning “there’s a gap so it doesn’t work” not “open for business”. This confusion in terminology also extends to drawbridges. ↩︎
I use the printer in LAN mode, which means there’s no way to monitor it from a phone, even if you’re connected to the same network still. ↩︎

An introduction to containers

2020-03-01T00:00:00Z

So. Many. Containers.

I’m a huge fan of (software) containers. Most people I know fall in to one of two camps: either they also use, and are fans of, containers, or they haven’t yet really figured them out and view them as some kind of voodoo that they don’t really want or need.

I’m writing this short guide to explain a little how containers work - and how running something in a container isn’t really that much different to running it normally - to hopefully enable more people in that second group to give them a try. It’s aimed at people who have a fairly good grasp of how Linux works.

Containers are often mentioned in the same breath as VMs, which is not a helpful comparison or analogy. Think of containers as standard units of software, much like how Intermodal containers are standard units of freight transport across the world. When a company internationally ships goods in volume there isn’t a question about how they’re packaged - they go in an intermodal container. The same container can be deployed on a freight train, a lorry, or a ship. The haulage company doesn’t need to care what’s in the container because they’re completely standardised. Likewise, with software containers you don’t really need to care about what’s inside: the software you’re deploying could be written in Go, Python2, Python3, Bash, PHP, LOLCODE, or anything¹.

What does a running container look like?

When you run a container, you’re just running a process. In a lot of ways it’s not very different to what happens if you were to start the same process on the host computer.

For example I have a container that just runs cat(1). With no arguments, cat will read from stdin until it receives an EOF, so it’s handy to test with. If I run ps a on my computer, I can see the cat process in amongst everything else I’m currently running:

    PID TTY      STAT   TIME COMMAND
   7199 pts/1    Ss     0:01 /usr/bin/zsh
 323806 pts/0    Ss+    0:00 /bin/cat
 324120 pts/4    R+     0:00 ps a

The /bin/cat process is in a container, and the ps a underneath it is just running like normal on my desktop. They look very similar, right? If I look under /proc/323806 I can see all the usual attributes, the same as any other process running.

If I run ps in a container, though, it’s a different story:

    PID TTY      STAT   TIME COMMAND
      1 pts/0    Rs+    0:00 ps a

So inside the container it looks like there’s only one process running. It can’t see anything running “outside” on my desktop. The secret here is that this isn’t a special container trick: this is just a feature of the Linux kernel called namespacing.

If we go back to procfs and look at the ns/pid node we can see the process in the container is in a separate PID (process ID) namespace to the one on my desktop:

# readlink /proc/323806/ns/pid  
pid:[4026534564]
# readlink /proc/7199/ns/pid
pid:[4026531836]

Almost all² processes running ’normally’ on my desktop have the same PID namespace, whereas each container gets their own by default. PID namespaces are hierarchical: a new process is assigned a PID in its own namespace, and the parent namespace, and the grandparent namespace, and so on. That’s why I can see the process running in the container from my normal shell - the container’s namespace is a child of the main namespace all of my desktop software is running in.

Linux supports - and container software makes use of - a bunch of other namespaces too: mount points, network, UTS³, cgroups, and more. These all play a part in isolating a container from the system it is running on.

You can manually run a process with unshare(1) to “unshare” some namespaces from the parent process. For example if I run unshare -fp --mount-proc ps a, it looks very similar to running ps instead the container:

    PID TTY      STAT   TIME COMMAND
      1 pts/4    R+     0:00 ps a

So: a process running inside a container is just a heavily namespaced process running otherwise normally in the operating system. No voodoo magic here!

What about the filesystem? What are ‘images’?

Containers run in their own mount namespace meaning mount points can be different inside the container to those on the host. This means the container can have a different / mounted to the host, effectively giving it its own filesystem.

The root filesystem of the container is defined in the container’s image. If I use Docker to run a container using the Ubuntu image (docker run ubuntu), the root filesystem inside that container will resemble a minimal ubuntu install. Note that this is just the filesystem: the container doesn’t have its own kernel.

You might be thinking that sounds pretty inefficient. Downloading Ubuntu is definitely not instant, and doing it for every application you run would be insane! Quite. Containers solve this by using filesystem layers. These are stacked on top of one another to create the final filesystem. Each layer can be retrieved and cached independently of all others.

Say (for simplicity) that the Ubuntu image is a single layer. If I run one container with that image, then the layer will be downloaded and cached once. If I run three hundred containers with that image then the layer will be downloaded and cached once. Even better, if I use another image that’s based on Ubuntu but adds some software on top, only the “on top” layer will be downloaded if I already have the relevant “Ubuntu” layer cached.

If all the layers are cached, what happens when you change a file? This is dealt with using the copy-on-write technique: when you modify a file it is copied from the source layer and the changes are only made in a new layer. This is handled by the OverlayFS filesystem which is part of the mainline kernel.

When a container is running, changes made to its filesystem are temporary, and do not persist across container restarts. To persist data - or introduce new data to a container - you can mount volumes. How this works varies depending on how you’re running your container, but at the basic level it is pretty much the same as bind-mounting (mount -o bind).

You may be familiar with using chroots to change the apparent root directory of processes, perhaps with full-blown “jails” built on top. Containers offer much better isolation thanks to the use of namespaces. Instead of being constrained to a portion of the host’s filesystem, they don’t even have it mounted! Containers also get to specify their environment - if they expect in certain places, for example - instead of the sysadmin having to manually set up the chroot. Finally, containers offer much more fine-grained control over what processes can do (if you want it), and allow much more advanced use-cases such as inter-container networking.

Images and filesystems employ a little magic to ensure that layers are reusable and cacheable, but again there’s nothing terribly special about them: a container has a filesystem that appears to it to work the same way as a filesystem on the host, and it’s using a standard filesystem shipped with the kernel.

How about networking?

Again, networking is namespaced, so a container has its own network stack, its own virtual network interface, its own IP address and so on. How that network interacts with your real network depends on how you’re running the container. Docker, for example, can add iptables rules to NAT traffic between containers' networks and the outside world.

Containers can generally be connected into networks, and can communicate amongst themselves without the traffic actually leaving the host machine. This allows you to, for example, run a SQL database and connect it to a web application without ever exposing the database to the outside world. Moreover, as well as being isolated from the outside world, it’s isolated from other containers in other networks. If one of your applications has a crazy bug or is compromised, this significantly limits the damage it can do.

You have to explicitly opt in to “publishing” ports from a container, which exposes them to the outside world (either directly, or via a load balancer or some other middle-man, depending on how you’re running the container). This means you can pick and chose how the outside world sees the app you’re deploying: if it’s a web service that listens on both port 443 and port 80, you can chose to only expose the encrypted port.

If you run some containers and create some networks, you can see the interfaces and bridges on the host:

$ ip l
...
6: br-2405a8cc0445: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue state UP mode DEFAULT group default 
    link/ether 02:42:3e:fa:23:62 brd ff:ff:ff:ff:ff:ff
8: veth8ed0735@if7: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue master br-2405a8cc0445 state UP mode DEFAULT group default 
    link/ether b2:c1:5d:55:26:9b brd ff:ff:ff:ff:ff:ff link-netnsid 2
10: veth541d84b@if9: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc noqueue master br-9d7bc4024c1a state UP mode DEFAULT group default 
    link/ether 86:aa:5f:ee:da:1a brd ff:ff:ff:ff:ff:ff link-netnsid 1

This shows a bridge and two virtual NICs, just the same as if you’d manually created them (albeit with seemingly random names). So: as before, nothing special here.

Docker? Compose? K8s? Floccinaucinihilipilification?

(OK, Floccinaucinihilipilification isn’t actually a container technology, as far as I’m aware.)

Docker is the most popular container engine - that is, the bit of software that actually runs containers. It’s responsible for setting up all those namespaces we found, downloading and caching image layers, and actually starting and stopping the processes. Docker runs as a system-wide daemon - when you run a command like docker run ubuntu it actually just instructs the daemon to do the work.

There are several alternatives to Docker for running containers; one interesting one is Podman which runs containers without a daemon. Container engines have all standardised around the same image format looked after by the Open Container Initiative, so an image you build in Docker can be used in Podman, or pretty much any other engine.

Docker compose is a tool for defining and running multiple-container applications. I mentioned earlier running a database alongside a webapp - in practice to do this you’re going to have to configure a network for them, configure a mount point for the database to persist its data on, pass credentials in to both the database and the application, and so on. Doing all that by hand is tedious and error prone.

Docker compose lets you write “compose files”, which are simple yaml descriptions of the containers you wish to run, their properties, and details about any volumes or networks you may want. Out of the box, docker-compose will create a default network for each compose file you run so the containers within it can communicate.

Kubernetes is a container orchestrator, designed to automate deployment and management of large numbers of containers. It works with Docker under the hood, but provides a huge amount of tooling on top to allow you to deploy applications and manage their dependencies. It runs across multiple physical (or virtual) machines (while still allowing containers to communicate privately), and can support massive workloads by scaling out services (running multiple copies of a container on different hosts) and load balancing. Kubernetes is sometimes shorted to k8s (as in K - 8 elided letters - s) because computer people don’t like long words.

OK, they make sense now. But why bother?

Hopefully if you’ve read this far you’ve already picked up on some of the potential benefits, but this is my personal list:

Isolation. If I run some software in a container, there is very little it can do to upset me. It’s not going to leave bits of itself all over my filesystem, it can’t steal all of the secrets in my home directory, I can even limit its CPU and memory resources if I want. If I decide to stop running it, I just delete the container and it is completely gone: no trace remains.

Ease of use. If you give me a container image I have a very good idea of how to run it already. I might need to do some minor configuration to expose ports or mount volumes, but there’s no question about how to run it, how to make it automatically start, and there’s no “installation” procedure. If I want to then swap it with an alternative (say, move from MySQL to MariaDB), it’s potentially just a case of changing the name of the image I pull.

Dependencies included. Containers just run. Python 2 software includes Python 2 and just work. Python 3 software includes Python 3 and just work. I don’t have a massive headache trying to run both at the same time, because they take care of their own messes. Similarly I’m not going to have to install npm or cargo or composer to pull in dependencies for an application: that’s going to have been done in the build process.

Reproducibility. As a fallout from having dependencies included and being isolated from everything else, containers give you amazing reproducibility. If it “works on your machine” in a container, it’ll almost certainly work in production because it’s the exact same environment.

Standardisation. At the start of this article I called containers standard units of software. One of my favourite advantages of containers is that you basically get an API to list all the software you’re running. Most container engines let you supply labels attached to containers as well, so you can add your own annotations. I use this to annotate services which expose HTTP endpoints, and I have a tool that automatically generates SSL certificates for them and configures haproxy to route traffic to them. I can’t imagine how I’d do this without containers - I imagine it’d involve a lot of manual work.

Hopefully this has helped demystify containers a little. If you feel like I’ve missed something important out, or I’ve left you more confused than when you started, feel free to drop me a note using the feedback form below.

OK, maybe you should care if you’re deploying something written in crazy languages like PHP. ↩︎
Some multi-process apps, such as web browsers, are starting to use namespaces to enhance security, as do certain package systems like Flatpak ↩︎
“Unix timesharing system”; in practice this means having a separate hostname ↩︎

Debugging beyond the debugger

2019-05-08T00:00:00Z

Real-life debugging tools

Most programming — and sysadmin — problems can be debugged in a fairly straight forward manner using logs, print statements, educated guesses, or an actual debugger. Sometimes, though, the problem is more elusive. There’s a wider box of tricks that can be employed in these cases but I’ve not managed to find a nice overview of them, so here’s mine. I’m mainly focusing on Linux and similar systems, but there tend to be alternatives available for other Operating Systems or VMs if you seek them out.

Networking

tcpdump

tcpdump prints out descriptions of packets on a network interface. You can apply filters to limit which packets are displayed, chose to dump the entire content of the packet, and so forth.

Typical usage might look something like:

# tcpdump -nSi eth0 port 80
tcpdump: verbose output suppressed, use -v or -vv for full protocol decode
listening on eth0, link-type EN10MB (Ethernet), capture size 262144 bytes
16:03:35.577781 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [S], seq 2815779044, win 64800, options [mss 1440,sackOK,TS val 2378811665 ecr 0,nop,wscale 7], length 0
16:03:35.586853 IP6 2001:db8::2.80 > 2001:db8::1.54742: Flags [S.], seq 1522609102, ack 2815779045, win 28560, options [mss 1440,sackOK,TS val 3063610173 ecr 2378811665,nop,wscale 7], length 0
16:03:35.586877 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [.], ack 1522609103, win 507, options [nop,nop,TS val 2378811674 ecr 3063610173], length 0
16:03:35.620678 IP6 2001:db8::1.54742 > 2001:db8::2.80: Flags [P.], seq 2815779045:2815779399, ack 1522609103, win 507, options [nop,nop,TS val 2378811708 ecr 3063610173], length 354: HTTP: GET / HTTP/1.1

Here you can see the start of a plaintext HTTP request: the three-way handshake as the TCP connection is established followed by a GET request. Even if the data is encrypted as it will be in most cases, it’s often useful to see the “shape” of the transmissions: did the client start sending data when it connected, did the server ever respond, etc.

Daniel Miessler has a good tutorial on tcpdump if you’re not familiar with it and don’t want to jump straight into the man page.

… with Docker

Docker sets up separate network namespaces for each container. To see the traffic across the interfaces of a single container you can nsenter the container’s network namespace:

# nsenter -t $(docker inspect --format '{{.State.Pid}}' my_container) -n tcpdump -nS port 80

This retrieves the PID for the container, and tells nsenter to enter the network (-n) namespace from the given target (-t) PID, and then run the given command (in this case tcpdump ...).

openssl s_client / s_server

When a connection is using TLS it’s often useful to try connecting to the server and see what certificate it presents, algorithms it negotiates, and so forth. OpenSSL offers two useful subcommands which can help with this: s_client for connecting as a client, and s_server for listening to connections.

For example, using s_client to connect to google.com on the standard HTTPS port shows us details about the server cert and its verification status:

$ openssl s_client -connect google.com:443
CONNECTED(00000003)
depth=2 OU = GlobalSign Root CA - R2, O = GlobalSign, CN = GlobalSign
verify return:1
depth=1 C = US, O = Google Trust Services, CN = Google Internet Authority G3
verify return:1
depth=0 C = US, ST = California, L = Mountain View, O = Google LLC, CN = *.google.com
verify return:1
---
Certificate chain
 0 s:C = US, ST = California, L = Mountain View, O = Google LLC, CN = *.google.com
   i:C = US, O = Google Trust Services, CN = Google Internet Authority G3
 1 s:C = US, O = Google Trust Services, CN = Google Internet Authority G3
   i:OU = GlobalSign Root CA - R2, O = GlobalSign, CN = GlobalSign
---
# ...

Whereas connecting to my webserver and providing an unknown host in the SNI field results in an SSL alert 112 (“The server name sent was not recognized”) and no server certificate is sent:

$ openssl s_client -connect chameth.com:443 -servername example.com
CONNECTED(00000003)
140384831313024:error:14094458:SSL routines:ssl3_read_bytes:tlsv1 unrecognized name:../ssl/record/rec_layer_s3.c:1536:SSL alert number 112
---
no peer certificate available
---
# ...

Often if you hit this kind of alert in an application the exact error will be lost somewhere in the many layers between the SSL library and the logs, so being able to directly connect and test can help diagnose a lot of issues.

Once a connection is established you can read and write plain text and it will be encrypted and decrypted automatically.

Java apps

If a Java app is involved in the connection, you can enable a lot of built-in debugging with a simple JVM property: javax.net.debug. You can tweak what exactly gets logged, but the easiest thing to do is just set the property to all and you’ll see information about certificate chains, verification, and packet dumps:

$ java -Djavax.net.debug=all -jar ....
# ...
found key for : duke
chain [0] = [
[
  Version: V1
  Subject: CN=Duke, OU=Java Software, O="Sun Microsystems, Inc.",
  L=Cupertino, ST=CA, C=US
# ...

More information about Java’s debugging options is available on docs.oracle.com.

Thread and core dumps

Higher-level languages frequently provide an interactive way to dump the current execution state of all of their threads (a “thread dump”). This is useful to spot deadlocks, some types of race conditions, and as a quick and dirty method of investigating hangs or excessive CPU usage.

With both Java and Go applications you can send a QUIT signal to have a thread dump printed out; Go applications will quit after doing so, Java ones will carry on running. At most terminals you can hit Ctrl and \ to send a QUIT signal.

For Java you can also use the jstack tool from the JDK to dump threads by PID; this can be useful if the application is running in the background or has redirected sysout:

$ jstack 8321
Attaching to process ID 8321, please wait...
Debugger attached successfully.
Client compiler detected.

Thread t@5: (state = BLOCKED)
 - java.lang.Object.wait(long) @bci=-1107318896 (Interpreted frame)
 - java.lang.Object.wait(long) @bci=0 (Interpreted frame)
 - java.lang.ref.ReferenceQueue.remove(long) @bci=44, line=116 (Interpreted frame)
 - java.lang.ref.ReferenceQueue.remove() @bci=2, line=132 (Interpreted frame)
 - java.lang.ref.Finalizer$FinalizerThread.run() @bci=3, line=159 (Interpreted frame)

# ...

A core dump provides more complete information about the state of a process, but is often more complex to interpret. The gcore utility from GDB will create a core dump of a process with a given PID. You can then generally load the core file using your normal debugger, depending on the language in question.

System calls

strace is the swiss army knife for seeing what a process is doing. It details each system call made by a program (you can filter them down, of course). For example:

$ strace -e read curl https://google.com/
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0 \236\0\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0P!\0\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\3\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\200l\2\0\0\0\0\0"..., 832) = 832
read(3, "\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\20Q\0\0\0\0\0\0"..., 832) = 832
# ...
read(3, "\0\0\0\0\0\0\0\4\25\345\366\302\273sE6\365wI\225\321|\3435Z\362\216\372\215\251aO"..., 253) = 253
<HTML><HEAD><meta http-equiv="content-type" content="text/html;charset=utf-8">
<TITLE>301 Moved</TITLE></HEAD><BODY>
<H1>301 Moved</H1>
The document has moved
<A HREF="https://www.google.com/">here</A>.
</BODY></HTML>
read(3, "\27\3\3\0!", 5)                = 5
# ...

Brendan Gregg has a nice guide on strace and alternatives.

… with docker

When the application is running in docker you can usually just strace it from the host with the correct PID (from e.g. docker inspect --format '{{.State.Pid}}' my_container). Sometimes you may need to trace the startup of an application though, which is a bit trickier. Instead you can run a new container using the same PID namespace as your target, and the permissions needed to strace:

$ docker run --rm -it --pid=container:my_container \
  --net=container:my_container \
  --cap-add sys_admin \
  --cap-add sys_ptrace \
  alpine

From within the new container you can install strace, and trace any running program within the target container using strace -p as normal. To start a new program you need access to the target container’s filesystem, which you can get to via /proc/1/root (PID 1 being the main process that docker started in the target container).

Files

Sometimes the problem might relate to file access. There are a couple of straight forward — but nonetheless useful — tools which might help here. inotifywait uses the Linux inotify subsystem to watch files or directories for operations. For example:

$ inotifywait -mr site/content
Setting up watches.  Beware: since -r was given, this may take a while!
Watches established.
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ OPEN 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ MODIFY 2019-05-08-debugging-beyond-the-debugger.md
site/content/post/ CLOSE_WRITE,CLOSE 2019-05-08-debugging-beyond-the-debugger.md
# ...

Here the -m switch makes inotifywait monitor the files forever (instead of exiting on the first modification, which is the normal behaviour) and r makes it recurse into the directory and monitor each file and subdirectory in there.

If you want to see what processes currently have a file open, fuser is the go-to tool. For example:

$ fuser -v /
                     USER PID ACCESS COMMAND
/:                   root     kernel mount /
                     chris      2961 .rc.. systemd
                     chris      2986 .r... gdm-x-session
                     chris      2994 .r... dbus-daemon
                     chris      3001 .r... gnome-session-b
# ...

Honourable mentions

These aren’t really debugging tools, but I feel it’s worth mentioning as they often feature somewhere along the debugging-of-weird-problems journey.

I’ve seen some weird and wonderful problems happen because a disk is full, so a quick df early on in the debugging process never hurts. Some apps may hang, some may corrupt their config, some may fall over and die; sometimes the manner in which they fail doesn’t obviously point to a disk space issue.

Another issue that comes up now and then — especially inside VMs or other environment that don’t have a decent amount of “noise” happening — is entropy exhaustion. A quick look at /proc/sys/kernel/random/entropy_avail should be enough to confirm that everything is ticking along nicely. If it’s exceedingly low then you may find that anything involving random number generation stalls (TLS connections for example).